Performance Improvment for CTE

I have below query which is used in a View which checks duplicate rows and selects it for further processing

with MyCTETable (JobDefListPKey, BpaPKey,JobDefId,TacticKey,cnt) as
  (select BaseTable.JobDefListPKey ,
          BaseTable.BpaMainPKey,
          Jdl.Id,
          BaseTable.TacticPKey ,
          COUNT(*)
   from JOBDEFINITIONLIST JDL
   inner Join JobDefinitionListMeta JDLMeta ON JDL.JobDefListMetaPKey = JDLMeta.PKey
   and JDLMeta.StandardJobs= '0'
   and JDLMeta.Status<>'d'
   and JDL.Status<>'d'
   and JDLMeta.MyUniqueAnswer='1'
   Inner Join BaseTable BaseTable ON JDL.PKey = BaseTable.JobDefListPKey
   and BaseTable.SalesOrg = '111'
   and BaseTable.Status<>'d'
   group by BaseTable.JobDefListPKey,
            Jdl.Id,
            BaseTable.BpaMainPKey,
            BaseTable.TacticPKey having COUNT(*)>1)
select list.PKey
from MyCTETable,
     BaseTable as list
where list.JobDefListPKey = MyCTETable.JobDefListPKey
  and list.BpaMainPKey =MyCTETable.BpaPKey
  and list.Done ='0'
  and list.Status <>'d'
  and list.BpaMainPKey in
    (Select distinct BpaMainPKey
     from BaseTable
     where JobDefListPKey =MyCTETable.JobDefListPKey
       and Done<>'0'
       and Status <>'d')

Above query is returning 532084 records in around 15 mins.

Just need your opinion, any changes/optimization can be done in query to improve the performance?

Note: Indexes and statistics are all maintained.

-Vaibhav Chaudhari